hIPPYlib
2.3.0
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hIPPYlib
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
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Z
_
_acorr() (in module hippylib.mcmc.diagnostics)
_acorr_vs_lag() (in module hippylib.mcmc.diagnostics)
_BilaplacianR (class in hippylib.modeling.prior)
_BilaplacianRsolver (class in hippylib.modeling.prior)
_createLUSolver() (hippylib.modeling.PDEProblem.PDEVariationalProblem method)
_deprecated_copy() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
_mesh2triang() (in module hippylib.utils.nb)
_mgs_reortho() (hippylib.algorithms.multivector.MultiVector method)
_mgs_stable() (hippylib.algorithms.multivector.MultiVector method)
_mplot_cellfunction() (in module hippylib.utils.nb)
_mplot_function() (in module hippylib.utils.nb)
_Prior (class in hippylib.modeling.prior)
_RinvM (class in hippylib.modeling.prior)
_sample_given_prior() (hippylib.modeling.posterior.GaussianLRPosterior method)
_sample_given_white_noise() (hippylib.modeling.posterior.GaussianLRPosterior method)
_solve_ls() (hippylib.algorithms.NewtonCG.ReducedSpaceNewtonCG method)
_solve_tr() (hippylib.algorithms.NewtonCG.ReducedSpaceNewtonCG method)
A
acceptance_ratio() (hippylib.mcmc.kernels.MALAKernel method)
amg_method() (in module hippylib.algorithms.linalg)
animate() (in module hippylib.utils.nb)
append() (hippylib.mcmc.tracers.FullTracer method)
(hippylib.mcmc.tracers.NullTracer method)
(hippylib.mcmc.tracers.QoiTracer method)
(hippylib.modeling.misfit.MultiStateMisfit method)
apply_ij() (hippylib.modeling.misfit.ContinuousStateObservation method)
(hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
(hippylib.modeling.misfit.Misfit method)
(hippylib.modeling.misfit.MultiStateMisfit method)
(hippylib.modeling.misfit.PointwiseStateObservation method)
(hippylib.modeling.model.Model method)
apply_ijk() (hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
applyC() (hippylib.modeling.model.Model method)
applyCt() (hippylib.modeling.model.Model method)
applyR() (hippylib.modeling.model.Model method)
applyWmm() (hippylib.modeling.model.Model method)
applyWmu() (hippylib.modeling.model.Model method)
applyWum() (hippylib.modeling.model.Model method)
applyWuu() (hippylib.modeling.model.Model method)
assemblePointwiseObservation() (in module hippylib.modeling.pointwiseObservation)
assign() (hippylib.mcmc.chain.SampleStruct method)
axpy() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
B
BFGS (class in hippylib.algorithms.bfgs)
BFGS_operator (class in hippylib.algorithms.bfgs)
BFGS_ParameterList() (in module hippylib.algorithms.bfgs)
BFGSoperator_ParameterList() (in module hippylib.algorithms.bfgs)
BiLaplacianPrior() (in module hippylib.modeling.prior)
Borthogonalize() (hippylib.algorithms.multivector.MultiVector method)
C
CGSampler (class in hippylib.algorithms.cgsampler)
CGSolverSteihaug (class in hippylib.algorithms.cgsolverSteihaug)
CGSolverSteihaug_ParameterList() (in module hippylib.algorithms.cgsolverSteihaug)
check_g() (in module hippylib.algorithms.randomizedEigensolver)
check_std() (in module hippylib.algorithms.randomizedEigensolver)
checkdlversion() (in module hippylib.utils.checkDolfinVersion)
coarsen_v() (in module hippylib.utils.nb)
consume_random() (hippylib.mcmc.chain.MCMC method)
(hippylib.mcmc.kernels.ISKernel method)
(hippylib.mcmc.kernels.MALAKernel method)
(hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.pCNKernel method)
ContinuousStateObservation (class in hippylib.modeling.misfit)
copy() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
cost() (hippylib.modeling.misfit.ContinuousStateObservation method)
(hippylib.modeling.misfit.Misfit method)
(hippylib.modeling.misfit.MultiStateMisfit method)
(hippylib.modeling.misfit.PointwiseStateObservation method)
(hippylib.modeling.model.Model method)
(hippylib.modeling.posterior.GaussianLRPosterior method)
(hippylib.modeling.prior._Prior method)
D
delta() (hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.ISKernel method)
derivativeInfo() (hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.ISKernel method)
(hippylib.mcmc.kernels.MALAKernel method)
(hippylib.mcmc.kernels.pCNKernel method)
DiagonalOperator (class in hippylib.algorithms.linalg)
dlversion() (in module hippylib.utils.checkDolfinVersion)
dot_mv() (hippylib.algorithms.multivector.MultiVector method)
dot_v() (hippylib.algorithms.multivector.MultiVector method)
doublePass() (in module hippylib.algorithms.randomizedEigensolver)
doublePassG() (in module hippylib.algorithms.randomizedEigensolver)
E
estimate_diagonal_inv2() (in module hippylib.algorithms.linalg)
eval() (hippylib.mcmc.chain.NullQoi method)
evalGradientParameter() (hippylib.modeling.model.Model method)
(hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
export() (hippylib.algorithms.multivector.MultiVector method)
exportPointwiseObservation() (in module hippylib.modeling.pointwiseObservation)
F
FDHessian (class in hippylib.modeling.reducedHessian)
FullTracer (class in hippylib.mcmc.tracers)
G
gaussian_engine() (in module hippylib.algorithms.traceEstimator)
GaussianLRPosterior (class in hippylib.modeling.posterior)
GaussianRealPrior (class in hippylib.modeling.prior)
generate_parameter() (hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
generate_state() (hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
generate_vector() (hippylib.modeling.model.Model method)
get_diagonal() (hippylib.algorithms.lowRankOperator.LowRankOperator method)
(in module hippylib.algorithms.linalg)
GetFromOwnedGid() (in module hippylib.algorithms.linalg)
getHessianPreconditioner() (hippylib.modeling.prior._Prior method)
GNHessian() (hippylib.modeling.reducedHessian.ReducedHessian method)
gpCNKernel (class in hippylib.mcmc.kernels)
grad() (hippylib.modeling.misfit.ContinuousStateObservation method)
(hippylib.modeling.misfit.Misfit method)
(hippylib.modeling.misfit.MultiStateMisfit method)
(hippylib.modeling.misfit.PointwiseStateObservation method)
(hippylib.modeling.prior._Prior method)
H
hippylib (module)
hippylib.algorithms (module)
hippylib.algorithms.bfgs (module)
hippylib.algorithms.cgsampler (module)
hippylib.algorithms.cgsolverSteihaug (module)
hippylib.algorithms.linalg (module)
hippylib.algorithms.lowRankOperator (module)
hippylib.algorithms.multivector (module)
hippylib.algorithms.NewtonCG (module)
hippylib.algorithms.randomizedEigensolver (module)
hippylib.algorithms.steepestDescent (module)
hippylib.algorithms.traceEstimator (module)
hippylib.mcmc (module)
hippylib.mcmc.chain (module)
hippylib.mcmc.diagnostics (module)
hippylib.mcmc.kernels (module)
hippylib.mcmc.tracers (module)
hippylib.modeling (module)
hippylib.modeling.expression (module)
hippylib.modeling.misfit (module)
hippylib.modeling.model (module)
hippylib.modeling.modelVerify (module)
hippylib.modeling.PDEProblem (module)
hippylib.modeling.pointwiseObservation (module)
hippylib.modeling.posterior (module)
hippylib.modeling.prior (module)
hippylib.modeling.reducedHessian (module)
hippylib.modeling.timeDependentVector (module)
hippylib.modeling.variables (module)
hippylib.utils (module)
hippylib.utils.checkDolfinVersion (module)
hippylib.utils.nb (module)
hippylib.utils.parameterList (module)
hippylib.utils.random (module)
hippylib.utils.vector2function (module)
I
init_parameter() (hippylib.modeling.model.Model method)
(hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
init_sample() (hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.ISKernel method)
(hippylib.mcmc.kernels.MALAKernel method)
(hippylib.mcmc.kernels.pCNKernel method)
init_vector() (hippylib.algorithms.bfgs.RescaledIdentity method)
(hippylib.algorithms.linalg.DiagonalOperator method)
(hippylib.algorithms.linalg.Operator2Solver method)
(hippylib.algorithms.linalg.Solver2Operator method)
(hippylib.algorithms.lowRankOperator.LowRankOperator method)
(hippylib.modeling.posterior.GaussianLRPosterior method)
(hippylib.modeling.posterior.LowRankHessian method)
(hippylib.modeling.posterior.LowRankPosteriorSampler method)
(hippylib.modeling.prior.GaussianRealPrior method)
(hippylib.modeling.prior.LaplacianPrior method)
(hippylib.modeling.prior.SqrtPrecisionPDE_Prior method)
(hippylib.modeling.prior._BilaplacianR method)
(hippylib.modeling.prior._BilaplacianRsolver method)
(hippylib.modeling.prior._Prior method)
(hippylib.modeling.prior._RinvM method)
(hippylib.modeling.reducedHessian.FDHessian method)
(hippylib.modeling.reducedHessian.ReducedHessian method)
initialize() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
inner() (hippylib.algorithms.linalg.DiagonalOperator method)
(hippylib.algorithms.linalg.Operator2Solver method)
(hippylib.algorithms.linalg.Solver2Operator method)
(hippylib.algorithms.lowRankOperator.LowRankOperator method)
(hippylib.modeling.posterior.LowRankHessian method)
(hippylib.modeling.prior._BilaplacianR method)
(hippylib.modeling.reducedHessian.FDHessian method)
(hippylib.modeling.reducedHessian.ReducedHessian method)
(hippylib.modeling.timeDependentVector.TimeDependentVector method)
integratedAutocorrelationTime() (in module hippylib.mcmc.diagnostics)
ISKernel (class in hippylib.mcmc.kernels)
K
klDistanceFromPrior() (hippylib.modeling.posterior.GaussianLRPosterior method)
L
LaplacianPrior (class in hippylib.modeling.prior)
LowRankHessian (class in hippylib.modeling.posterior)
LowRankOperator (class in hippylib.algorithms.lowRankOperator)
LowRankPosteriorSampler (class in hippylib.modeling.posterior)
LS_ParameterList() (in module hippylib.algorithms.NewtonCG)
M
MALAKernel (class in hippylib.mcmc.kernels)
MatAtB() (in module hippylib.algorithms.linalg)
MatMatMult() (in module hippylib.algorithms.linalg)
MatMvMult() (in module hippylib.algorithms.multivector)
MatPtAP() (in module hippylib.algorithms.linalg)
MCMC (class in hippylib.mcmc.chain)
Misfit (class in hippylib.modeling.misfit)
Model (class in hippylib.modeling.model)
modelVerify() (in module hippylib.modeling.modelVerify)
modelVerifyPlotErrors() (in module hippylib.modeling.modelVerify)
MollifiedBiLaplacianPrior() (in module hippylib.modeling.prior)
mpi_comm() (hippylib.modeling.prior._BilaplacianR method)
mult() (hippylib.algorithms.linalg.DiagonalOperator method)
(hippylib.algorithms.linalg.Solver2Operator method)
(hippylib.algorithms.lowRankOperator.LowRankOperator method)
(hippylib.modeling.posterior.LowRankHessian method)
(hippylib.modeling.prior._BilaplacianR method)
(hippylib.modeling.prior._RinvM method)
(hippylib.modeling.reducedHessian.FDHessian method)
(hippylib.modeling.reducedHessian.ReducedHessian method)
multi1_plot() (in module hippylib.utils.nb)
MultiStateMisfit (class in hippylib.modeling.misfit)
MultiVector (class in hippylib.algorithms.multivector)
MvDSmatMult() (in module hippylib.algorithms.multivector)
N
name() (hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.ISKernel method)
(hippylib.mcmc.kernels.MALAKernel method)
(hippylib.mcmc.kernels.pCNKernel method)
norm() (hippylib.algorithms.multivector.MultiVector method)
(hippylib.modeling.timeDependentVector.TimeDependentVector method)
normal() (hippylib.utils.random.Random method)
normal_perturb() (hippylib.utils.random.Random method)
NullQoi (class in hippylib.mcmc.chain)
NullTracer (class in hippylib.mcmc.tracers)
O
Operator2Solver (class in hippylib.algorithms.linalg)
orthogonalize() (hippylib.algorithms.multivector.MultiVector method)
P
ParameterList (class in hippylib.utils.parameterList)
parRandom (in module hippylib.utils.random)
pCNKernel (class in hippylib.mcmc.kernels)
PDEProblem (class in hippylib.modeling.PDEProblem)
PDEVariationalProblem (class in hippylib.modeling.PDEProblem)
plot() (in module hippylib.utils.nb)
plot_eigenvalues() (in module hippylib.utils.nb)
plot_eigenvectors() (in module hippylib.utils.nb)
plot_pts() (in module hippylib.utils.nb)
pointwise_variance() (hippylib.modeling.posterior.GaussianLRPosterior method)
(hippylib.modeling.prior._Prior method)
PointwiseStateObservation (class in hippylib.modeling.misfit)
proposal() (hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.ISKernel method)
(hippylib.mcmc.kernels.MALAKernel method)
(hippylib.mcmc.kernels.pCNKernel method)
Q
QoiTracer (class in hippylib.mcmc.tracers)
R
rademacher() (hippylib.utils.random.Random method)
rademacher_engine() (in module hippylib.algorithms.traceEstimator)
Random (class in hippylib.utils.random)
reason (hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug attribute)
ReducedHessian (class in hippylib.modeling.reducedHessian)
ReducedSpaceNewtonCG (class in hippylib.algorithms.NewtonCG)
ReducedSpaceNewtonCG_ParameterList() (in module hippylib.algorithms.NewtonCG)
RescaledIdentity (class in hippylib.algorithms.bfgs)
retrieve() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
Rsolver() (hippylib.modeling.model.Model method)
run() (hippylib.mcmc.chain.MCMC method)
S
sample() (hippylib.algorithms.cgsampler.CGSampler method)
(hippylib.mcmc.kernels.ISKernel method)
(hippylib.mcmc.kernels.MALAKernel method)
(hippylib.mcmc.kernels.gpCNKernel method)
(hippylib.mcmc.kernels.pCNKernel method)
(hippylib.modeling.posterior.GaussianLRPosterior method)
(hippylib.modeling.posterior.LowRankPosteriorSampler method)
(hippylib.modeling.prior.GaussianRealPrior method)
(hippylib.modeling.prior.LaplacianPrior method)
(hippylib.modeling.prior.SqrtPrecisionPDE_Prior method)
(hippylib.modeling.prior._Prior method)
SampleStruct (class in hippylib.mcmc.chain)
set_H0inv() (hippylib.algorithms.bfgs.BFGS_operator method)
set_operator() (hippylib.algorithms.cgsampler.CGSampler method)
(hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug method)
set_preconditioner() (hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug method)
set_TR() (hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug method)
setLinearizationPoint() (hippylib.modeling.misfit.ContinuousStateObservation method)
(hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
(hippylib.modeling.misfit.Misfit method)
(hippylib.modeling.misfit.MultiStateMisfit method)
(hippylib.modeling.misfit.PointwiseStateObservation method)
setPointForHessianEvaluations() (hippylib.modeling.model.Model method)
SetToOwnedGid() (in module hippylib.algorithms.linalg)
show_solution() (in module hippylib.utils.nb)
showMe() (hippylib.utils.parameterList.ParameterList method)
singlePass() (in module hippylib.algorithms.randomizedEigensolver)
singlePassG() (in module hippylib.algorithms.randomizedEigensolver)
solve() (hippylib.algorithms.bfgs.BFGS method)
(hippylib.algorithms.NewtonCG.ReducedSpaceNewtonCG method)
(hippylib.algorithms.bfgs.BFGS_operator method)
(hippylib.algorithms.bfgs.RescaledIdentity method)
(hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug method)
(hippylib.algorithms.linalg.Operator2Solver method)
(hippylib.algorithms.lowRankOperator.LowRankOperator method)
(hippylib.algorithms.steepestDescent.SteepestDescent method)
(hippylib.modeling.posterior.LowRankHessian method)
(hippylib.modeling.prior._BilaplacianRsolver method)
solveAdj() (hippylib.modeling.model.Model method)
(hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
solveAdjIncremental() (hippylib.modeling.model.Model method)
solveFwd() (hippylib.modeling.model.Model method)
(hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
solveFwdIncremental() (hippylib.modeling.model.Model method)
solveIncremental() (hippylib.modeling.PDEProblem.PDEProblem method)
(hippylib.modeling.PDEProblem.PDEVariationalProblem method)
Solver2Operator (class in hippylib.algorithms.linalg)
SqrtPrecisionPDE_Prior (class in hippylib.modeling.prior)
SteepestDescent (class in hippylib.algorithms.steepestDescent)
SteepestDescent_ParameterList() (in module hippylib.algorithms.steepestDescent)
store() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
T
termination_reasons (hippylib.algorithms.bfgs.BFGS attribute)
(hippylib.algorithms.NewtonCG.ReducedSpaceNewtonCG attribute)
(hippylib.algorithms.steepestDescent.SteepestDescent attribute)
TimeDependentVector (class in hippylib.modeling.timeDependentVector)
to_dense() (in module hippylib.algorithms.linalg)
TR_ParameterList() (in module hippylib.algorithms.NewtonCG)
trace() (hippylib.algorithms.lowRankOperator.LowRankOperator method)
(hippylib.modeling.posterior.GaussianLRPosterior method)
(hippylib.modeling.prior._Prior method)
(in module hippylib.algorithms.linalg)
trace2() (hippylib.algorithms.lowRankOperator.LowRankOperator method)
trace_update() (hippylib.modeling.posterior.GaussianLRPosterior method)
TraceEstimator (class in hippylib.algorithms.traceEstimator)
Transpose() (in module hippylib.algorithms.linalg)
TrueHessian() (hippylib.modeling.reducedHessian.ReducedHessian method)
U
uniform() (hippylib.utils.random.Random method)
update() (hippylib.algorithms.bfgs.BFGS_operator method)
update_x_with_TR() (hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug method)
update_x_without_TR() (hippylib.algorithms.cgsolverSteihaug.CGSolverSteihaug method)
V
vector2Function() (in module hippylib.utils.vector2function)
W
write_vtk() (in module hippylib.modeling.pointwiseObservation)
Z
zero() (hippylib.modeling.timeDependentVector.TimeDependentVector method)
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